An improved version of PrESSTo, called SlideBase is now available at http://slidebase.binf.ku.dk
SlideBase offers selection of cell or tissue specific genomic elements using sliders for the following datasets:
Using statistical methods, we have defined several enhancer tracks used in Andersson et al. Most track sets are defined in the BED format unless specified otherwise and can be downloaded. Tracks from section 1 to 3 can also be viewed in the UCSC Genome Browser
Each predicted enhancer is described in BED12 format with two blocks denoting the merged regions of transcription initiation on the minus and plus strands. The thickStart and thickEnd columns denote the inferred mid position. The score column gives the maximum pooled expression of TCs used to construct each bidirectional loci.